Inputs and parameters

Parameters
  • Run functional and taxonomic annotations Yes
  • Run MEGAN Yes
  • Run annotations with COGs Yes
  • Build submission files Yes
  • Run blast against your own fasta file No

Annotation

Result table
Prokka Fasta files Prokka annotation Diamond fosmid against NR Diamond fosmid against Uniprot Diamond ORFs against NR Diamond ORFs against Uniprot COGs annotation
DNA - PROT GFF TSV TSV TSV TSV RPSBLAST
Result table by fosmid
Sample Length GC% A T G C Others Prokka GenBank Annotated ORFs
against Uniprot
Annotated ORFs
against NR
MEGANCOGs
bioindent1.C1a 38297 44.248711 126437822 91210FastaGBK5 / 4117 / 41Function unknown
bioindent2.C1 37094 37.2611696 115787119 67010FastaGBK15 / 4436 / 44Amino acid transport and metabolism
Fosmid browser